In FDT if you go to  FDT> Preference>Build Path you can declare how you want your project to be build.

I like to keep all the source files in the src, but I like to keep the swf that gets generated in a deploy folder. Use these settings below and click okay, and you are set

By |2009-11-15T06:04:36+00:00November 15th, 2009|